In another workspace this discrepancy was no problem. I noticed a discrepancy in the channelnames: v-450/50-B-A vs. v-450_50-B-A (slash vs. Such question was asked before: Opencyto - detector name not found in flow data, but pretty sure it's there That worked for me! Unfortunately, now another error pops up while parsing the Workspace:Īll FCS files have the same following channels:Įrror in mat, guid, gains, nodeInd, recompute, : Loaded via a namespace (and not attached): stats graphics grDevices utils datasets methods base LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib Platform: x86_64-apple-darwin15.6.0 (64-bit)īLAS: /System/Library/Frameworks/amework/Versions/A/Frameworks/amework/Versions/A/libBLAS.dylib (Samples with with less than 10 Populations are Compensation files and are not within the group which I want to import.) I have used another FlowCytometer this time but this should not be a problem I guess.Īfter defining my gates (gating tree is equal within the group that I want to parse) I save the wsp-file and try to load it into R: Well, there is an error message but don't why it pops up, since I am doing everything similar to previous analyses. My standard procedure of parsing a FlowJo workspace has failed for unknown reason.
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